Variant report

Variant	rs35944462
Chromosome Location	chr2:127265791-127265792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs11674285	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11677531	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11681865	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11684739	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11684984	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11688466	0.83[AFR][1000 genomes]
rs11690602	0.83[AFR][1000 genomes]
rs11691316	0.83[AFR][1000 genomes]
rs11883942	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11904079	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12990019	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12993851	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12996594	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12996629	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12999041	0.83[AFR][1000 genomes]
rs13000835	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13002409	0.91[EUR][1000 genomes]
rs13002851	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13003278	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13005708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13008004	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13008398	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13010045	0.83[AFR][1000 genomes]
rs13020525	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13020607	0.83[AFR][1000 genomes]
rs13023737	0.83[EUR][1000 genomes]
rs13024070	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13025129	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13033014	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13034238	0.83[AFR][1000 genomes]
rs13035307	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13036140	0.83[AFR][1000 genomes]
rs1371627	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1387284	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17677529	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34228135	0.83[AFR][1000 genomes]
rs34548924	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34653086	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34662457	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34690725	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34731630	0.83[AFR][1000 genomes]
rs34939949	0.83[AFR][1000 genomes]
rs34981967	0.83[AFR][1000 genomes]
rs35012492	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35260231	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35338260	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35364068	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35371374	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35384854	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35453044	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35506144	0.83[AFR][1000 genomes]
rs35683961	0.82[EUR][1000 genomes]
rs35703634	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35901702	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35976822	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36061035	0.83[AFR][1000 genomes]
rs36109238	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55733801	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56049721	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56072540	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56100722	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56332215	0.83[EUR][1000 genomes]
rs66530889	0.83[AFR][1000 genomes]
rs66701958	0.83[AFR][1000 genomes]
rs66815786	0.83[AFR][1000 genomes]
rs66993274	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67155347	0.83[AFR][1000 genomes]
rs67271291	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67286117	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67323263	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67453660	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67960481	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72831488	0.83[EUR][1000 genomes]
rs72831489	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72843721	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001995	chr2:126506739-127314488	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1002265	chr2:127029745-127733458	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv535919	chr2:127029745-127733458	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv834364	chr2:127100752-127267070	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127264400-127265800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:127264600-127265800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:127265200-127267400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:127265200-127268400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:127265200-127270000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:127265400-127268000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:127265400-127270600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:127265600-127267800	Weak transcription	Placenta Amnion	Placenta Amnion

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