Variant report
Variant | rs13040047 |
---|---|
Chromosome Location | chr20:14478091-14478092 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs13036305 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13036870 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13037403 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13037982 | 1.00[CEU][hapmap] |
rs13039094 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs13039304 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs13042875 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs13043292 | 0.95[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs13043921 | 0.83[CEU][hapmap] |
rs17227062 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs17812701 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17812707 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs17812713 | 0.95[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs17812749 | 0.95[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs1998103 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs1998104 | 0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2327859 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2423789 | 0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2423795 | 0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2423796 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2423797 | 0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2423798 | 0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2423799 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2423801 | 0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs34202312 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34366310 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs35658161 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs36023726 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs365225 | 0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs373874 | 0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs376577 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs376972 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs384498 | 0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs391092 | 0.84[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs398372 | 0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs405620 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs405993 | 0.81[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs406307 | 0.81[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs406441 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs407908 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs408176 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs412345 | 0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs416436 | 0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs420299 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs429495 | 0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs429643 | 0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs430452 | 0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs436322 | 0.88[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs441540 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs441647 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs475471 | 0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs4814307 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs6079476 | 0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6110316 | 0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs62202873 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs62202876 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1055499 | chr20:14224873-14848061 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv1064721 | chr20:14384931-14648223 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv833926 | chr20:14410153-14572336 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv585442 | chr20:14420556-14485947 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv1065426 | chr20:14426642-14478256 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | nsv1059770 | chr20:14432394-14549781 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
7 | nsv544187 | chr20:14432394-14549781 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
8 | nsv529577 | chr20:14434373-14799157 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
9 | esv3525012 | chr20:14475602-14480050 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
10 | esv3525011 | chr20:14476552-14479950 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
11 | esv3525010 | chr20:14476991-14479385 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
12 | esv3454110 | chr20:14477147-14479065 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
13 | esv3525019 | chr20:14477192-14479068 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
14 | esv3454105 | chr20:14477194-14479041 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
15 | esv3525013 | chr20:14477199-14479041 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
16 | esv3525014 | chr20:14477208-14478994 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | inside rSNPs | diseases |
17 | esv3454109 | chr20:14477215-14478986 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
18 | esv3525017 | chr20:14477235-14479005 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
19 | esv3525016 | chr20:14477242-14479003 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
20 | esv3454106 | chr20:14477255-14479025 | Weak transcription Flanking Active TSS Enhancers | n/a | n/a | inside rSNPs | diseases |
21 | esv3454107 | chr20:14477280-14478960 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
22 | esv3525015 | chr20:14477290-14478959 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
23 | nsv179622 | chr20:14477294-14478955 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
24 | esv3454111 | chr20:14477294-14478957 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
25 | esv3525020 | chr20:14477294-14478957 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
26 | esv21327 | chr20:14477380-14478896 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
27 | nsv1064008 | chr20:14477895-14540691 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:14462600-14488400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr20:14477200-14479200 | Enhancers | Hela-S3 | cervix |
3 | chr20:14477600-14478400 | Flanking Active TSS | HUVEC | blood vessel |
4 | chr20:14477600-14479000 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
5 | chr20:14477800-14478200 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
6 | chr20:14477800-14478600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
7 | chr20:14478000-14479200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |