Variant report
Variant | rs2327859 |
---|---|
Chromosome Location | chr20:14506059-14506060 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs13036305 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs13036870 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs13037403 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs13039094 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs13039304 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs13040047 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs13042875 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs13043292 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs17227062 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs17812701 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs17812707 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs17812713 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs17812749 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1998103 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1998104 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2423789 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs2423795 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs2423796 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs2423797 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs2423798 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs2423799 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs2423801 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs34202312 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs34366310 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs35658161 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs36023726 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs365225 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs373874 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs376577 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs376972 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs384498 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs391092 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs398372 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs405620 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs405993 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs406307 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs406441 | 0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs407908 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs408176 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs412345 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs416436 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs420299 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs429495 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs429549 | 0.90[AFR][1000 genomes] |
rs429643 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs430452 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs436322 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs441540 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs441647 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs453013 | 0.90[AFR][1000 genomes] |
rs475471 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs4814307 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6079476 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs6110316 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs62202873 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1055499 | chr20:14224873-14848061 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv1064721 | chr20:14384931-14648223 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv833926 | chr20:14410153-14572336 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv1059770 | chr20:14432394-14549781 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv544187 | chr20:14432394-14549781 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv529577 | chr20:14434373-14799157 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
7 | nsv1064008 | chr20:14477895-14540691 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
8 | nsv1060786 | chr20:14486713-14648467 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
9 | nsv544188 | chr20:14486713-14648467 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
10 | nsv912690 | chr20:14488761-14553745 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
11 | nsv1060985 | chr20:14488785-14759939 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
12 | nsv912691 | chr20:14495489-14536808 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
13 | nsv1060291 | chr20:14498526-14578899 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:14504200-14510600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
2 | chr20:14504600-14517200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |