Variant report
Variant | rs13043406 |
---|---|
Chromosome Location | chr20:15510834-15510835 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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rs_ID | r2[population] |
---|---|
rs10485528 | 1.00[CEU][hapmap] |
rs10485529 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11698669 | 1.00[ASN][1000 genomes] |
rs11906249 | 0.92[YRI][hapmap] |
rs1233776 | 1.00[ASN][1000 genomes] |
rs13038859 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13042710 | 1.00[ASN][1000 genomes] |
rs16995918 | 0.91[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs17693165 | 1.00[ASN][1000 genomes] |
rs35039954 | 1.00[ASN][1000 genomes] |
rs4814393 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs7262810 | 1.00[CEU][hapmap] |
rs7264397 | 1.00[CEU][hapmap];0.90[YRI][hapmap] |
rs7272149 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
rs7273284 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv833927 | chr20:15362602-15520185 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | esv2751909 | chr20:15489871-15656007 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |