Variant report

Variant	rs13058568
Chromosome Location	chr22:34248606-34248607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:34245347..34248923-chr22:34315491..34319689,7	MCF-7	breast:
2	chr22:34248240..34252170-chr22:34315347..34319641,4	MCF-7	breast:
3	chr22:34248231..34249994-chr22:34261049..34263874,2	MCF-7	breast:
4	chr22:34246562..34250566-chr22:34253925..34258689,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133424	Chromatin interaction
ENSG00000273082	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1009730	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13056358	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13057617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547409	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1807710	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2018292	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34780334	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35709129	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8138735	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9607079	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9607080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9607086	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9609876	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9609877	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9609878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9609879	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9609881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934109	chr22:33722066-34339500	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv2763261	chr22:33831348-34288389	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1057450	chr22:33928913-34849012	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv914990	chr22:34090440-34373293	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv914991	chr22:34106384-34293516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1056553	chr22:34116979-34286191	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv914992	chr22:34135007-34283144	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv524156	chr22:34145596-34260738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv529886	chr22:34153740-34258847	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1061736	chr22:34178034-34394918	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv544689	chr22:34178034-34394918	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1066419	chr22:34231732-34553006	Active TSS Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv544690	chr22:34231732-34553006	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv3343210	chr22:34236744-34404210	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:34238400-34249000	Weak transcription	Aorta	Aorta
2	chr22:34243200-34248800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr22:34243200-34250800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr22:34244600-34249000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr22:34244800-34249600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr22:34245800-34249600	Enhancers	Fetal Intestine Large	intestine
7	chr22:34246000-34249600	Enhancers	Fetal Intestine Small	intestine
8	chr22:34246200-34249000	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr22:34246200-34249200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr22:34246200-34249200	Enhancers	Duodenum Mucosa	Duodenum
11	chr22:34246200-34249200	Enhancers	Stomach Mucosa	stomach
12	chr22:34246200-34249600	Enhancers	Fetal Heart	heart
13	chr22:34246400-34249000	Weak transcription	Brain Angular Gyrus	brain
14	chr22:34246400-34249200	Weak transcription	Pancreas	Pancrea
15	chr22:34246800-34249200	Enhancers	NHLF	lung
16	chr22:34246800-34249400	Enhancers	Psoas Muscle	Psoas
17	chr22:34246800-34249600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr22:34247000-34249400	Enhancers	Rectal Smooth Muscle	rectum
19	chr22:34247000-34249600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr22:34247200-34249200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr22:34247200-34249200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr22:34247200-34249400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr22:34247200-34249400	Weak transcription	Spleen	Spleen
24	chr22:34247400-34249200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr22:34247400-34249200	Enhancers	Colon Smooth Muscle	Colon
26	chr22:34247400-34249600	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr22:34247400-34249600	Weak transcription	Gastric	stomach
28	chr22:34247400-34249800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr22:34247400-34250400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr22:34247600-34249400	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr22:34247600-34249600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr22:34247600-34249600	Weak transcription	Fetal Brain Female	brain
33	chr22:34247800-34249000	Weak transcription	Fetal Kidney	kidney
34	chr22:34247800-34249000	Weak transcription	Left Ventricle	heart
35	chr22:34247800-34249000	Weak transcription	Small Intestine	intestine
36	chr22:34247800-34249200	Enhancers	Colonic Mucosa	Colon
37	chr22:34247800-34249200	Weak transcription	Osteobl	bone
38	chr22:34247800-34249400	Enhancers	Liver	Liver
39	chr22:34247800-34249400	Weak transcription	HSMM	muscle
40	chr22:34247800-34249600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr22:34247800-34249600	Weak transcription	Lung	lung
42	chr22:34247800-34263000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr22:34248000-34249000	Weak transcription	Primary B cells from peripheral blood	blood
44	chr22:34248000-34249000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr22:34248000-34249000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr22:34248000-34249000	Weak transcription	Right Atrium	heart
47	chr22:34248000-34249000	Weak transcription	Right Ventricle	heart
48	chr22:34248000-34249200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr22:34248000-34249200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr22:34248000-34249200	Weak transcription	Brain Anterior Caudate	brain

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