Variant report

Variant	rs9609878
Chromosome Location	chr22:34242052-34242053
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1009730	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13056358	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13057617	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13058568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1547409	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1807710	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2018292	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34780334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35709129	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs496956	1.00[CHB][hapmap]
rs8138735	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9607079	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9607080	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9607086	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9609876	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609877	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609879	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609881	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9609882	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9609883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934109	chr22:33722066-34339500	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv2763261	chr22:33831348-34288389	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1057450	chr22:33928913-34849012	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv914990	chr22:34090440-34373293	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv914991	chr22:34106384-34293516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1056553	chr22:34116979-34286191	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv914992	chr22:34135007-34283144	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv524156	chr22:34145596-34260738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv529886	chr22:34153740-34258847	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1061736	chr22:34178034-34394918	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv544689	chr22:34178034-34394918	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1066419	chr22:34231732-34553006	Active TSS Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv544690	chr22:34231732-34553006	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv3343210	chr22:34236744-34404210	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:34226600-34246200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr22:34232000-34244200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr22:34232600-34246800	Weak transcription	Gastric	stomach
4	chr22:34234200-34243600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr22:34234200-34245200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr22:34234600-34244400	Weak transcription	Lung	lung
7	chr22:34237800-34242800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr22:34237800-34244200	Weak transcription	Osteobl	bone
9	chr22:34237800-34246000	Weak transcription	Right Ventricle	heart
10	chr22:34237800-34246800	Weak transcription	Psoas Muscle	Psoas
11	chr22:34237800-34247200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr22:34238400-34249000	Weak transcription	Aorta	Aorta
13	chr22:34239400-34243800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr22:34240600-34243000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr22:34240600-34243600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr22:34240600-34244200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr22:34240600-34244400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr22:34240600-34244400	Weak transcription	Fetal Heart	heart
19	chr22:34240600-34244400	Weak transcription	NHDF-Ad	bronchial
20	chr22:34240600-34245200	Weak transcription	Ovary	ovary
21	chr22:34240600-34246000	Weak transcription	Fetal Lung	lung
22	chr22:34240600-34246200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr22:34240600-34246200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr22:34240600-34246800	Weak transcription	NHLF	lung
25	chr22:34240600-34247000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr22:34240600-34247200	Weak transcription	Right Atrium	heart
27	chr22:34240800-34243000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr22:34240800-34243000	Weak transcription	GM12878-XiMat	blood
29	chr22:34240800-34243200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr22:34240800-34243200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr22:34240800-34244200	Weak transcription	Left Ventricle	heart
32	chr22:34240800-34244400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr22:34240800-34244400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr22:34240800-34246800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr22:34240800-34247400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr22:34240800-34247400	Weak transcription	Colon Smooth Muscle	Colon
37	chr22:34241800-34242200	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr22:34241800-34242200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr22:34242000-34243000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr22:34242000-34243200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr22:34242000-34246000	Weak transcription	Small Intestine	intestine

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