Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13084328	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13084743	0.82[ASN][1000 genomes]
rs13087527	0.81[ASN][1000 genomes]
rs13094362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099753	0.85[ASN][1000 genomes]
rs1375513	0.82[ASN][1000 genomes]
rs1584481	0.82[ASN][1000 genomes]
rs16843054	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs16843057	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs16843104	1.00[ASW][hapmap];0.90[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs16843187	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1823360	0.82[ASN][1000 genomes]
rs1900909	0.82[ASN][1000 genomes]
rs2053861	0.82[ASN][1000 genomes]
rs34109547	0.81[ASN][1000 genomes]
rs34422754	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4928107	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6441563	0.81[ASN][1000 genomes]
rs71315219	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71315220	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71315221	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs969628	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100730000-100745800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:100735400-100736400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:100735400-100736400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:100735400-100736400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:100735400-100736600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:100735600-100736200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:100735600-100736400	Enhancers	NHDF-Ad	bronchial
8	chr3:100735600-100736400	Enhancers	NHEK	skin
9	chr3:100735800-100736200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:100735800-100736200	Active TSS	Ovary	ovary
11	chr3:100735800-100736200	Flanking Active TSS	Osteobl	bone
12	chr3:100735800-100736400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:100735800-100736600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:100735800-100736600	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:100735800-100736600	Enhancers	HSMMtube	muscle
16	chr3:100736000-100736200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:100736000-100736200	Enhancers	HUVEC	blood vessel
18	chr3:100736000-100736400	Enhancers	NHLF	lung

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