Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100759370..100761193-chr3:100762880..100765226,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13060756	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13084328	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13084743	0.82[ASN][1000 genomes]
rs13087527	0.81[ASN][1000 genomes]
rs13094362	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13099753	0.85[ASN][1000 genomes]
rs1375513	0.82[ASN][1000 genomes]
rs1584481	0.82[ASN][1000 genomes]
rs16843054	0.91[AFR][1000 genomes]
rs16843057	0.91[AFR][1000 genomes]
rs16843187	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1823360	0.82[ASN][1000 genomes]
rs1900909	0.82[ASN][1000 genomes]
rs2053861	0.82[ASN][1000 genomes]
rs34109547	0.81[ASN][1000 genomes]
rs34422754	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4928107	0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6441563	0.81[ASN][1000 genomes]
rs71315219	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71315221	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs969628	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100755600-100762800	Enhancers	NHDF-Ad	bronchial
2	chr3:100758200-100763200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:100758400-100761600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:100758400-100761800	Weak transcription	NHLF	lung
5	chr3:100758800-100761200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:100759400-100761200	Weak transcription	Osteobl	bone
7	chr3:100760200-100762800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:100760800-100762000	Weak transcription	HSMM	muscle
9	chr3:100761000-100762400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:100761000-100762600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:100761000-100762600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:100761000-100762600	Enhancers	HMEC	breast
13	chr3:100761000-100762600	Enhancers	NHEK	skin
14	chr3:100761000-100762800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:100761000-100762800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:100761000-100762800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search: