Variant report

Variant	rs13061174
Chromosome Location	chr3:86086872-86086873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11127913	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11127914	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11719943	0.81[AMR][1000 genomes]
rs12486099	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12486982	0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12488773	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12491363	0.82[CEU][hapmap];0.89[GIH][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap]
rs12491891	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs12492459	0.83[CEU][hapmap]
rs12493881	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13065014	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13073604	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13073774	0.81[ASN][1000 genomes]
rs13082138	0.94[MKK][hapmap];0.84[TSI][hapmap]
rs13083257	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2324975	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2325006	0.82[CEU][hapmap];0.89[GIH][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap]
rs34289000	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35012249	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35242846	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35259978	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35772683	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35885688	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs36080783	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4368495	0.83[CEU][hapmap]
rs4600827	0.94[MKK][hapmap];0.84[TSI][hapmap]
rs4688895	0.96[CEU][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56339824	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56760958	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62261591	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62261592	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62261593	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62263325	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68058340	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7620825	0.82[TSI][hapmap]
rs7627287	0.81[TSI][hapmap]
rs9879903	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links