Variant report

Variant	rs13061634
Chromosome Location	chr3:56054077-56054078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11130494	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11917067	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13093416	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1485673	0.86[GIH][hapmap]
rs2125244	0.88[ASN][1000 genomes]
rs6445762	0.88[ASN][1000 genomes]
rs6806267	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1012098	chr3:56040905-56055908	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13061634	C3orf51	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56041600-56054400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:56048600-56059000	Weak transcription	Fetal Intestine Large	intestine
3	chr3:56052000-56055200	Enhancers	Brain Germinal Matrix	brain
4	chr3:56052400-56054200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:56052600-56054800	Enhancers	Fetal Heart	heart
6	chr3:56052600-56055000	Enhancers	Ovary	ovary
7	chr3:56052600-56055200	Enhancers	Fetal Stomach	stomach
8	chr3:56053200-56054200	Enhancers	Stomach Mucosa	stomach
9	chr3:56053400-56054600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:56053600-56055200	Enhancers	Fetal Lung	lung
11	chr3:56053800-56057800	Weak transcription	Pancreas	Pancrea
12	chr3:56054000-56054400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:56054000-56054400	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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