Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:41399537..41402518-chr3:56017547..56020527,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11709347	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11709483	0.82[EUR][1000 genomes]
rs11713587	0.82[ASN][1000 genomes]
rs11714345	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11720792	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12233468	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13061634	0.88[ASN][1000 genomes]
rs13066051	0.88[ASN][1000 genomes]
rs13084391	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1379720	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1914864	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1976790	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1976791	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2034916	0.82[ASN][1000 genomes]
rs2125244	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445762	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806432	0.81[EUR][1000 genomes]
rs732254	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs734941	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7641427	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs897964	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56003800-56023000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:56013200-56022200	Weak transcription	Pancreas	Pancrea
3	chr3:56015800-56020400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:56015800-56020600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:56019000-56022200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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