Variant report

Variant	rs6806432
Chromosome Location	chr3:56034902-56034903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11707255	0.82[ASN][1000 genomes]
rs11709347	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11709483	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11713228	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11713587	0.84[EUR][1000 genomes]
rs11714345	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11717188	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11720792	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11917737	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12233468	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13066051	0.84[EUR][1000 genomes]
rs13077670	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13084391	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13087971	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13093416	0.80[ASN][1000 genomes]
rs13097006	0.83[EUR][1000 genomes]
rs1379720	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1458056	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1458059	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1812146	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1914864	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1976790	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1976791	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2034916	0.84[EUR][1000 genomes]
rs34851422	0.82[ASN][1000 genomes]
rs34917685	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4974153	0.82[ASN][1000 genomes]
rs6445762	0.81[EUR][1000 genomes]
rs6806267	0.81[EUR][1000 genomes]
rs732254	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs734941	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7641427	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs897964	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs922003	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56029000-56035600	Weak transcription	Fetal Kidney	kidney
2	chr3:56033000-56035200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:56033000-56037000	Weak transcription	Ovary	ovary
4	chr3:56033000-56052000	Weak transcription	Brain Germinal Matrix	brain
5	chr3:56033200-56046800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:56033400-56035400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:56034200-56035800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:56034200-56035800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:56034600-56037200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:56034600-56037400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:56034800-56035200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:56034800-56035400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:56034800-56037800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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