Variant report

Variant	rs13062177
Chromosome Location	chr3:23119332-23119333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23117260..23119971-chr3:23124072..23125615,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13059127	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13067021	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13078875	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13090890	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13097096	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2359460	0.82[ASN][1000 genomes]
rs4858470	0.82[ASN][1000 genomes]
rs603056	1.00[JPT][hapmap]
rs861983	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520551	chr3:23115291-23120060	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23105000-23121400	Weak transcription	Psoas Muscle	Psoas
2	chr3:23110400-23119400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:23113600-23119400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:23115000-23121400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:23115200-23119400	Enhancers	HSMMtube	muscle
6	chr3:23115800-23121000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr3:23117200-23121000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:23117200-23121400	Weak transcription	Fetal Kidney	kidney
9	chr3:23117400-23121400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:23117400-23121400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:23117600-23121400	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:23118000-23119400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:23118400-23119400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:23118400-23121000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:23118400-23121200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:23118400-23121400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:23118400-23121400	Weak transcription	Adipose Nuclei	Adipose
18	chr3:23118600-23119400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr3:23118600-23120800	Weak transcription	Fetal Heart	heart
20	chr3:23118600-23121400	Weak transcription	Fetal Lung	lung
21	chr3:23118600-23123000	Weak transcription	Aorta	Aorta
22	chr3:23119000-23122200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr3:23119200-23120200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr3:23119200-23121000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr3:23119200-23121000	Weak transcription	Fetal Muscle Leg	muscle
26	chr3:23119200-23121000	Weak transcription	HSMM	muscle
27	chr3:23119200-23121400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:23119200-23121400	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr3:23119200-23122000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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