Variant report

Variant	rs13064720
Chromosome Location	chr3:156854826-156854827
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156854811..156856693-chr3:156876042..156877591,2	MCF-7	breast:
2	chr3:156394321..156397041-chr3:156854404..156856931,2	MCF-7	breast:
3	chr3:156847271..156850096-chr3:156851185..156855376,4	K562	blood:
4	chr3:156852948..156855056-chr3:156876407..156878368,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13064954	0.94[YRI][hapmap]
rs66686295	0.82[AFR][1000 genomes]
rs6769530	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156842400-156855600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:156843000-156855600	Enhancers	Osteobl	bone
3	chr3:156845400-156855600	Enhancers	NHDF-Ad	bronchial
4	chr3:156845600-156855600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:156846800-156855000	Weak transcription	Fetal Kidney	kidney
6	chr3:156847000-156855400	Enhancers	Fetal Heart	heart
7	chr3:156848200-156855600	Enhancers	HMEC	breast
8	chr3:156848400-156855600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:156848400-156855600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:156848400-156866000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:156848400-156866000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:156848600-156855200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:156848600-156855200	Enhancers	Fetal Muscle Leg	muscle
14	chr3:156848600-156855400	Enhancers	HSMM	muscle
15	chr3:156848600-156855600	Enhancers	Brain Cingulate Gyrus	brain
16	chr3:156848600-156855600	Enhancers	Brain Hippocampus Middle	brain
17	chr3:156848600-156855600	Enhancers	Brain Substantia Nigra	brain
18	chr3:156848600-156856400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr3:156848600-156876600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:156848800-156855400	Weak transcription	Primary B cells from cord blood	blood
21	chr3:156849000-156855600	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr3:156849000-156855800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:156849000-156860000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr3:156849000-156861000	Weak transcription	Dnd41	blood
25	chr3:156849000-156861800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr3:156849000-156862400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:156849200-156855200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr3:156849200-156855400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:156849200-156856000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr3:156849200-156861600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:156849200-156861600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr3:156849400-156855000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr3:156849400-156855200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:156849400-156861600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr3:156849800-156864000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr3:156850000-156855200	Weak transcription	Primary T cells from cord blood	blood
37	chr3:156850000-156855200	Enhancers	Pancreas	Pancrea
38	chr3:156850000-156855600	Enhancers	Muscle Satellite Cultured Cells	--
39	chr3:156850000-156860200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr3:156850200-156855000	Enhancers	Aorta	Aorta
41	chr3:156850200-156855000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr3:156850400-156860800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr3:156850400-156861600	Weak transcription	Hela-S3	cervix
44	chr3:156850600-156855400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr3:156850800-156855000	Enhancers	Right Ventricle	heart
46	chr3:156850800-156855200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr3:156851000-156861000	Weak transcription	HUVEC	blood vessel
48	chr3:156851400-156855400	Enhancers	Fetal Intestine Large	intestine
49	chr3:156851400-156856000	Enhancers	Stomach Mucosa	stomach
50	chr3:156851800-156855400	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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