Variant report

Variant	rs6769530
Chromosome Location	chr3:157029522-157029523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157022820..157026060-chr3:157027403..157031164,3	K562	blood:
2	chr3:157027546..157030155-chr3:157033829..157035547,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13064720	0.87[JPT][hapmap]
rs13099226	0.84[JPT][hapmap]
rs13325944	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73156718	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9818517	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157013000-157032600	Weak transcription	NH-A	brain
2	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:157021800-157035400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:157028000-157030600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:157028200-157030000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:157028200-157030600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:157028200-157030800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:157028400-157029600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:157028400-157030600	Enhancers	Hela-S3	cervix
10	chr3:157028600-157030000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:157028800-157030200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:157029000-157030200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:157029000-157030400	Enhancers	HSMM	muscle
14	chr3:157029000-157030400	Enhancers	HSMMtube	muscle
15	chr3:157029000-157030600	Enhancers	NHLF	lung
16	chr3:157029000-157030800	Weak transcription	HUVEC	blood vessel
17	chr3:157029200-157030600	Enhancers	Osteobl	bone
18	chr3:157029200-157031400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:157029400-157029800	Weak transcription	NHDF-Ad	bronchial
20	chr3:157029400-157030000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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