Variant report

Variant	rs13065438
Chromosome Location	chr3:140929510-140929511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13069904	0.85[EUR][1000 genomes]
rs1511371	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2048459	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2291039	0.82[EUR][1000 genomes]
rs4683585	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4683586	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7613113	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7652530	0.81[EUR][1000 genomes]
rs9819210	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140923200-140931200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:140923600-140931400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:140927800-140932200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:140929000-140931400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:140929200-140929600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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