Variant report

Variant	rs2048459
Chromosome Location	chr3:140935717-140935718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1010717	0.83[AFR][1000 genomes]
rs12486843	0.85[EUR][1000 genomes]
rs13065438	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13069904	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1511371	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1511372	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs1511373	0.85[EUR][1000 genomes]
rs1877222	0.85[EUR][1000 genomes]
rs2291039	0.94[EUR][1000 genomes]
rs4683585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4683586	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6779870	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs7613113	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7652530	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs9875630	0.92[EUR][1000 genomes]
rs9880393	0.88[AFR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140931800-140936000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:140931800-140941200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:140934400-140938400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:140935000-140937000	Enhancers	HepG2	liver
5	chr3:140935200-140936400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:140935600-140936000	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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