Variant report

Variant	rs9880393
Chromosome Location	chr3:140921893-140921894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1010717	0.94[AFR][1000 genomes]
rs13069522	0.83[EUR][1000 genomes]
rs1588533	0.84[EUR][1000 genomes]
rs2048456	0.81[EUR][1000 genomes]
rs2048459	0.88[AFR][1000 genomes]
rs2219786	0.93[EUR][1000 genomes]
rs4683577	0.83[EUR][1000 genomes]
rs4683585	0.88[AFR][1000 genomes]
rs59577474	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6774265	0.84[EUR][1000 genomes]
rs9819210	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9867871	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140921400-140922200	Enhancers	Fetal Intestine Large	intestine
2	chr3:140921600-140923000	Weak transcription	Placenta	Placenta
3	chr3:140921800-140922800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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