Variant report

Variant	rs1511372
Chromosome Location	chr3:140941407-140941408
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13069904	0.96[CEU][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs1511371	0.83[EUR][1000 genomes]
rs1511373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16851151	0.81[MKK][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs1877222	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2048459	0.85[EUR][1000 genomes]
rs2291039	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4683585	0.85[EUR][1000 genomes]
rs4683586	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs6439982	0.81[MKK][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs6439983	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs6779870	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7613113	0.82[EUR][1000 genomes]
rs7652530	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs967526	0.95[CHB][hapmap];0.80[CHD][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];0.86[EUR][1000 genomes]
rs9875630	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460870	chr3:140938546-141005574	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591892	chr3:140938546-141005574	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1511372	XRN1	cis	parietal	SCAN
rs1511372	ACPL2	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140937600-140946800	Weak transcription	Thymus	Thymus
2	chr3:140940000-140949400	Weak transcription	Fetal Heart	heart
3	chr3:140941200-140941600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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