Variant report

Variant	rs967526
Chromosome Location	chr3:140945685-140945686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1511372	0.95[CHB][hapmap];0.80[CHD][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];0.86[EUR][1000 genomes]
rs1511373	0.86[EUR][1000 genomes]
rs1511378	0.90[GIH][hapmap]
rs1877222	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6439988	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6779870	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs7652530	0.95[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460870	chr3:140938546-141005574	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591892	chr3:140938546-141005574	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs967526	XRN1	cis	parietal	SCAN
rs967526	ACPL2	cis	parietal	SCAN
rs967526	ACPL2	cis	Whole Blood	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140937600-140946800	Weak transcription	Thymus	Thymus
2	chr3:140940000-140949400	Weak transcription	Fetal Heart	heart
3	chr3:140945200-140947600	Enhancers	Dnd41	blood
4	chr3:140945600-140948000	Enhancers	Fetal Intestine Large	intestine
5	chr3:140945600-140949800	Enhancers	Fetal Stomach	stomach
6	chr3:140945600-140950000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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