Variant report

Variant	rs13066966
Chromosome Location	chr3:139993146-139993147
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1011758	1.00[ASN][1000 genomes]
rs1351313	0.81[EUR][1000 genomes]
rs1383021	1.00[ASN][1000 genomes]
rs1479868	0.93[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1479869	0.96[CEU][hapmap];0.92[YRI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1479871	1.00[ASN][1000 genomes]
rs1531637	1.00[ASN][1000 genomes]
rs4327349	1.00[ASN][1000 genomes]
rs4683485	1.00[CEU][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6784585	1.00[ASN][1000 genomes]
rs6792173	1.00[ASN][1000 genomes]
rs6802157	1.00[ASN][1000 genomes]
rs71314547	1.00[ASN][1000 genomes]
rs967861	0.88[CEU][hapmap]
rs9811609	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs9864847	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139980200-139999400	Weak transcription	Pancreas	Pancrea
2	chr3:139991800-139993600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:139992200-139993200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:139992200-139993200	Bivalent Enhancer	HMEC	breast
5	chr3:139992400-139993200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:139992400-139994600	Weak transcription	HSMMtube	muscle
7	chr3:139992600-139993200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:139992800-139993200	Enhancers	Adipose Nuclei	Adipose
9	chr3:139993000-139995800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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