Variant report

Variant	rs9811609
Chromosome Location	chr3:139992571-139992572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:139991297..139993647-chr3:139995026..139996887,3	K562	blood:
2	chr3:139985294..139989044-chr3:139992240..139995969,3	K562	blood:
3	chr3:139965201..139967010-chr3:139990337..139992942,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11717522	1.00[JPT][hapmap]
rs11917245	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11924457	0.88[ASN][1000 genomes]
rs11927090	0.81[ASN][1000 genomes]
rs13066966	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs13319247	1.00[JPT][hapmap]
rs1383020	1.00[JPT][hapmap]
rs1479866	1.00[JPT][hapmap]
rs1479868	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs1479869	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs1564395	1.00[JPT][hapmap]
rs1564397	1.00[JPT][hapmap]
rs2061927	1.00[JPT][hapmap]
rs2061929	1.00[JPT][hapmap]
rs2086330	1.00[JPT][hapmap]
rs34648747	0.88[ASN][1000 genomes]
rs3943277	1.00[JPT][hapmap]
rs4076964	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4234485	0.87[ASN][1000 genomes]
rs4263252	0.87[ASN][1000 genomes]
rs4362682	1.00[JPT][hapmap]
rs4365587	1.00[JPT][hapmap]
rs4371479	1.00[JPT][hapmap]
rs4423726	0.92[CEU][hapmap];0.82[ASN][1000 genomes]
rs4438621	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4502547	0.81[CEU][hapmap]
rs4518083	1.00[JPT][hapmap]
rs4583599	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4683484	1.00[JPT][hapmap];0.85[YRI][hapmap]
rs4683485	0.84[CEU][hapmap]
rs4683488	1.00[JPT][hapmap]
rs56834107	0.81[ASN][1000 genomes]
rs57446026	0.81[ASN][1000 genomes]
rs59385932	0.88[ASN][1000 genomes]
rs62267960	0.81[ASN][1000 genomes]
rs6414345	0.81[ASN][1000 genomes]
rs6765022	0.82[ASN][1000 genomes]
rs6765087	1.00[JPT][hapmap]
rs6789431	0.81[CEU][hapmap];0.90[YRI][hapmap]
rs72990200	0.88[ASN][1000 genomes]
rs7431715	1.00[JPT][hapmap]
rs7626587	0.87[ASN][1000 genomes]
rs7626588	0.87[ASN][1000 genomes]
rs7635923	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs967861	0.82[ASN][1000 genomes]
rs9816964	0.94[ASN][1000 genomes]
rs9817769	1.00[JPT][hapmap]
rs995578	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139980200-139999400	Weak transcription	Pancreas	Pancrea
2	chr3:139984400-139992800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:139989800-139992600	Weak transcription	NHEK	skin
4	chr3:139991800-139993600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:139992200-139993200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:139992200-139993200	Bivalent Enhancer	HMEC	breast
7	chr3:139992400-139993000	Enhancers	NH-A	brain
8	chr3:139992400-139993200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:139992400-139994600	Weak transcription	HSMMtube	muscle

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