Variant report

Variant	rs6414345
Chromosome Location	chr3:139999876-139999877
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11917245	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs11924457	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.81[ASN][1000 genomes]
rs11927090	0.87[ASN][1000 genomes]
rs1383020	0.94[ASN][1000 genomes]
rs1479866	1.00[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16850133	0.87[CHD][hapmap]
rs2061927	1.00[CHB][hapmap]
rs2061928	0.85[CHD][hapmap];1.00[GIH][hapmap]
rs34648747	0.81[ASN][1000 genomes]
rs4076964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4077501	1.00[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap]
rs4234485	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs4263252	1.00[CHB][hapmap];0.88[GIH][hapmap];0.93[ASN][1000 genomes]
rs4438621	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs4583599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56834107	0.87[ASN][1000 genomes]
rs57446026	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59385932	0.81[ASN][1000 genomes]
rs6439912	0.85[CHD][hapmap];1.00[TSI][hapmap]
rs6439913	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6439914	1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[ASN][1000 genomes]
rs6765022	0.85[CHD][hapmap]
rs6773144	0.85[CHD][hapmap];0.88[GIH][hapmap];0.81[ASN][1000 genomes]
rs6782976	1.00[TSI][hapmap]
rs72990200	0.81[ASN][1000 genomes]
rs73870714	0.80[ASN][1000 genomes]
rs73870715	0.80[ASN][1000 genomes]
rs7626587	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[TSI][hapmap];0.93[ASN][1000 genomes]
rs7626588	0.93[ASN][1000 genomes]
rs7635923	0.87[ASN][1000 genomes]
rs7638929	0.87[CHD][hapmap]
rs967861	0.85[CHD][hapmap]
rs9811609	0.81[ASN][1000 genomes]
rs9816964	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv963581	chr3:139998123-140007344	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139995400-140007400	Weak transcription	HSMMtube	muscle
2	chr3:139996000-140003400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:139999600-140015600	Weak transcription	Pancreas	Pancrea

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