Variant report

Variant	rs73870715
Chromosome Location	chr3:139972133-139972134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:139969847..139972662-chr3:139985088..139987480,2	K562	blood:
2	chr3:139970372..139972823-chr3:139975471..139977910,2	MCF-7	breast:
3	chr3:139965802..139967783-chr3:139969852..139972671,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11918688	1.00[EUR][1000 genomes]
rs11924457	1.00[EUR][1000 genomes]
rs11927090	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1383020	1.00[EUR][1000 genomes]
rs16850133	1.00[EUR][1000 genomes]
rs2061927	1.00[EUR][1000 genomes]
rs2061928	1.00[EUR][1000 genomes]
rs2086330	1.00[EUR][1000 genomes]
rs34648747	1.00[EUR][1000 genomes]
rs4076964	0.86[ASN][1000 genomes]
rs4142786	1.00[EUR][1000 genomes]
rs4234485	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4263252	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4266155	0.87[ASN][1000 genomes]
rs4362682	0.87[ASN][1000 genomes]
rs4365587	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4371479	0.80[ASN][1000 genomes]
rs4423726	0.82[ASN][1000 genomes]
rs4438621	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4502547	0.87[ASN][1000 genomes]
rs4518083	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4583599	0.80[ASN][1000 genomes]
rs4683817	0.80[ASN][1000 genomes]
rs56834107	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57193140	1.00[EUR][1000 genomes]
rs57446026	0.80[ASN][1000 genomes]
rs57563861	1.00[EUR][1000 genomes]
rs57865055	1.00[EUR][1000 genomes]
rs58140595	1.00[EUR][1000 genomes]
rs59385932	1.00[EUR][1000 genomes]
rs60094335	0.87[ASN][1000 genomes]
rs61015005	1.00[EUR][1000 genomes]
rs62267960	0.93[ASN][1000 genomes]
rs6414345	0.80[ASN][1000 genomes]
rs6439912	0.87[ASN][1000 genomes]
rs6439914	1.00[EUR][1000 genomes]
rs6765087	1.00[EUR][1000 genomes]
rs6773144	1.00[EUR][1000 genomes]
rs6782976	0.87[ASN][1000 genomes]
rs6789431	0.80[ASN][1000 genomes]
rs72990191	1.00[EUR][1000 genomes]
rs72990200	1.00[EUR][1000 genomes]
rs73867103	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73867105	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73867110	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73870712	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73870714	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7610342	0.86[EUR][1000 genomes]
rs7626587	0.86[ASN][1000 genomes]
rs7626588	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7635923	0.80[ASN][1000 genomes]
rs7638929	1.00[EUR][1000 genomes]
rs9816964	0.80[ASN][1000 genomes]
rs9840502	0.80[ASN][1000 genomes]
rs9844835	0.86[ASN][1000 genomes]
rs9846393	0.80[ASN][1000 genomes]
rs995578	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139970400-139972200	Enhancers	HSMMtube	muscle
2	chr3:139970600-139972800	Enhancers	Ovary	ovary
3	chr3:139971000-139972200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:139971200-139976400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:139971600-139972800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:139971600-139976800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:139971800-139973600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:139972000-139972200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr3:139972000-139972600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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