Variant report

Variant	rs6789431
Chromosome Location	chr3:139974934-139974935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139973735..139976098-chr3:139987936..139989908,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11717409	0.81[EUR][1000 genomes]
rs4266155	0.90[EUR][1000 genomes]
rs4362682	0.94[ASN][1000 genomes]
rs4365587	0.94[ASN][1000 genomes]
rs4371479	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4423726	0.89[CEU][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.84[LWK][hapmap];0.90[MEX][hapmap];0.88[MKK][hapmap];0.84[TSI][hapmap];0.88[ASN][1000 genomes]
rs4502547	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4683484	0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4683816	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs4683817	1.00[ASN][1000 genomes]
rs60094335	0.94[ASN][1000 genomes]
rs62267960	0.87[ASN][1000 genomes]
rs6439912	0.94[ASN][1000 genomes]
rs6765022	0.83[CHD][hapmap]
rs6765087	0.81[ASN][1000 genomes]
rs6782976	0.83[CHD][hapmap];0.94[ASN][1000 genomes]
rs72990191	0.81[ASN][1000 genomes]
rs73867103	0.94[ASN][1000 genomes]
rs73867105	0.94[ASN][1000 genomes]
rs73867110	0.94[ASN][1000 genomes]
rs73870714	0.80[ASN][1000 genomes]
rs73870715	0.80[ASN][1000 genomes]
rs7431715	0.83[ASN][1000 genomes]
rs7635923	0.85[CHD][hapmap]
rs967861	0.85[CHD][hapmap]
rs9811609	0.81[CEU][hapmap];0.90[YRI][hapmap]
rs9840502	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9844835	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.82[LWK][hapmap];0.89[MKK][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9846393	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9861445	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs995578	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139971200-139976400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:139971600-139976800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:139974800-139975000	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links