Variant report

Variant	rs60094335
Chromosome Location	chr3:139989641-139989642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139973735..139976098-chr3:139987936..139989908,2	K562	blood:
2	chr3:139980980..139982947-chr3:139988620..139990291,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs4362682	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4365587	1.00[ASN][1000 genomes]
rs4371479	0.94[ASN][1000 genomes]
rs4423726	0.94[ASN][1000 genomes]
rs4683484	0.89[ASN][1000 genomes]
rs4683817	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57446026	0.81[ASN][1000 genomes]
rs62267960	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6439912	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782976	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789431	0.94[ASN][1000 genomes]
rs73867103	1.00[ASN][1000 genomes]
rs73867105	1.00[ASN][1000 genomes]
rs73867110	1.00[ASN][1000 genomes]
rs73870714	0.87[ASN][1000 genomes]
rs73870715	0.87[ASN][1000 genomes]
rs7431715	0.89[ASN][1000 genomes]
rs7626587	0.96[EUR][1000 genomes]
rs9816964	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9840502	0.94[ASN][1000 genomes]
rs9844835	0.87[ASN][1000 genomes]
rs9846393	0.94[ASN][1000 genomes]
rs9861445	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139980200-139999400	Weak transcription	Pancreas	Pancrea
2	chr3:139984400-139992800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:139989000-139989800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:139989000-139989800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:139989000-139989800	Enhancers	HMEC	breast
6	chr3:139989000-139990000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:139989200-139989800	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links