Variant report

Variant	rs4362682
Chromosome Location	chr3:139984973-139984974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139975949..139977666-chr3:139982168..139985039,2	MCF-7	breast:
2	chr3:139980889..139983190-chr3:139984246..139986183,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11717522	1.00[JPT][hapmap]
rs11917245	1.00[JPT][hapmap]
rs13319247	1.00[JPT][hapmap]
rs1383020	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1479866	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1564395	1.00[JPT][hapmap]
rs1564397	1.00[JPT][hapmap]
rs2061927	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2061928	1.00[CHB][hapmap]
rs2061929	1.00[JPT][hapmap]
rs2086330	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3943277	1.00[JPT][hapmap]
rs4076964	1.00[JPT][hapmap]
rs4234484	1.00[CEU][hapmap]
rs4365587	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4371479	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4423726	0.94[ASN][1000 genomes]
rs4438621	1.00[JPT][hapmap]
rs4518083	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4583599	1.00[JPT][hapmap]
rs4683484	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4683488	1.00[JPT][hapmap]
rs4683817	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57446026	0.81[ASN][1000 genomes]
rs60094335	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62267960	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6439912	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439914	1.00[CHB][hapmap]
rs6765087	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6773144	1.00[CHB][hapmap]
rs6782976	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789431	0.94[ASN][1000 genomes]
rs73867103	1.00[ASN][1000 genomes]
rs73867105	1.00[ASN][1000 genomes]
rs73867110	1.00[ASN][1000 genomes]
rs73870714	0.87[ASN][1000 genomes]
rs73870715	0.87[ASN][1000 genomes]
rs7431715	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7626587	0.96[EUR][1000 genomes]
rs9811609	1.00[JPT][hapmap]
rs9816964	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9817769	1.00[JPT][hapmap]
rs9840502	0.94[ASN][1000 genomes]
rs9844835	0.87[ASN][1000 genomes]
rs9846393	0.94[ASN][1000 genomes]
rs9861445	0.89[ASN][1000 genomes]
rs995578	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139980200-139999400	Weak transcription	Pancreas	Pancrea
2	chr3:139981200-139989000	Weak transcription	Spleen	Spleen
3	chr3:139983600-139985000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:139983800-139985000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:139984000-139985000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:139984000-139985000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:139984200-139985000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:139984400-139992800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:139984600-139985000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:139984800-139985000	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links