Variant report

Variant	rs1479866
Chromosome Location	chr3:140003977-140003978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11717522	1.00[JPT][hapmap]
rs11917245	1.00[JPT][hapmap]
rs11927090	0.81[ASN][1000 genomes]
rs13319247	1.00[JPT][hapmap]
rs1383020	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1564395	1.00[JPT][hapmap]
rs1564397	1.00[JPT][hapmap]
rs2061927	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2061928	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2061929	1.00[JPT][hapmap]
rs2086330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3943277	1.00[JPT][hapmap]
rs4076964	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4234485	0.87[ASN][1000 genomes]
rs4263252	0.87[ASN][1000 genomes]
rs4362682	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4365587	1.00[JPT][hapmap]
rs4371479	1.00[JPT][hapmap]
rs4438621	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4518083	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4583599	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4683484	1.00[JPT][hapmap]
rs4683488	1.00[JPT][hapmap]
rs56834107	0.81[ASN][1000 genomes]
rs57446026	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6414345	1.00[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6439912	1.00[CHB][hapmap]
rs6439913	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439914	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs6765087	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6773144	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs6782976	1.00[CHB][hapmap]
rs7431715	1.00[JPT][hapmap]
rs7626587	0.87[ASN][1000 genomes]
rs7626588	0.87[ASN][1000 genomes]
rs7635923	0.81[ASN][1000 genomes]
rs967861	0.82[ASN][1000 genomes]
rs9811609	1.00[JPT][hapmap]
rs9816964	0.81[ASN][1000 genomes]
rs9817769	1.00[JPT][hapmap]
rs995578	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv963581	chr3:139998123-140007344	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139995400-140007400	Weak transcription	HSMMtube	muscle
2	chr3:139999600-140015600	Weak transcription	Pancreas	Pancrea
3	chr3:140003200-140004200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:140003200-140004400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:140003200-140004600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:140003200-140004800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:140003400-140004000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:140003400-140004000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:140003400-140004600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:140003400-140004800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr3:140003600-140004000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr3:140003600-140004600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:140003600-140009400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:140003800-140004400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:140003800-140004400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:140003800-140007400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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