Variant report

Variant	rs4371479
Chromosome Location	chr3:139976065-139976066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:139970372..139972823-chr3:139975471..139977910,2	MCF-7	breast:
2	chr3:139973735..139976098-chr3:139987936..139989908,2	K562	blood:
3	chr3:139975949..139977666-chr3:139982168..139985039,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11717522	1.00[JPT][hapmap]
rs11917245	1.00[JPT][hapmap]
rs13319247	1.00[JPT][hapmap]
rs1383020	1.00[JPT][hapmap]
rs1479866	1.00[JPT][hapmap]
rs1564395	1.00[JPT][hapmap]
rs1564397	1.00[JPT][hapmap]
rs2061927	1.00[JPT][hapmap]
rs2061929	1.00[JPT][hapmap]
rs2086330	1.00[JPT][hapmap]
rs2350515	0.88[CEU][hapmap]
rs3943277	1.00[JPT][hapmap]
rs4076964	1.00[JPT][hapmap]
rs4266155	0.82[AFR][1000 genomes]
rs4362682	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4365587	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4423726	0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4438621	1.00[JPT][hapmap]
rs4502547	0.84[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4518083	1.00[JPT][hapmap]
rs4583599	1.00[JPT][hapmap]
rs4683484	0.91[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4683488	1.00[JPT][hapmap]
rs4683817	1.00[ASN][1000 genomes]
rs60094335	0.94[ASN][1000 genomes]
rs62267960	0.87[ASN][1000 genomes]
rs6439912	0.94[ASN][1000 genomes]
rs6765087	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6782976	0.94[ASN][1000 genomes]
rs6789431	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72990191	0.81[ASN][1000 genomes]
rs73867103	0.94[ASN][1000 genomes]
rs73867105	0.94[ASN][1000 genomes]
rs73867110	0.94[ASN][1000 genomes]
rs73870714	0.80[ASN][1000 genomes]
rs73870715	0.80[ASN][1000 genomes]
rs7431715	0.85[CEU][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9811609	1.00[JPT][hapmap]
rs9817769	1.00[JPT][hapmap]
rs9840502	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9844835	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9846393	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9861445	0.92[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs995578	1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139971200-139976400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:139971600-139976800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:139975400-139976600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:139976000-139977800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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