Variant report

Variant	rs9844835
Chromosome Location	chr3:139979100-139979101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs2061927	0.80[ASN][1000 genomes]
rs2061928	0.80[ASN][1000 genomes]
rs2086330	0.80[ASN][1000 genomes]
rs2350515	0.88[CEU][hapmap]
rs4077501	0.83[CHD][hapmap]
rs4266155	0.82[AFR][1000 genomes]
rs4362682	0.87[ASN][1000 genomes]
rs4365587	0.87[ASN][1000 genomes]
rs4371479	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4423726	1.00[ASW][hapmap];0.83[CHD][hapmap];0.97[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4502547	0.92[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs4683484	0.91[CEU][hapmap]
rs4683817	0.93[ASN][1000 genomes]
rs57446026	0.80[ASN][1000 genomes]
rs60094335	0.87[ASN][1000 genomes]
rs62267960	0.80[ASN][1000 genomes]
rs6439912	0.83[CHD][hapmap];0.87[ASN][1000 genomes]
rs6765022	0.83[CHD][hapmap]
rs6773144	0.83[CHD][hapmap]
rs6782976	1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs6789431	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.82[LWK][hapmap];0.89[MKK][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73867103	0.87[ASN][1000 genomes]
rs73867105	0.87[ASN][1000 genomes]
rs73867110	0.87[ASN][1000 genomes]
rs73870714	0.86[ASN][1000 genomes]
rs73870715	0.86[ASN][1000 genomes]
rs7431715	0.88[CEU][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7626587	0.83[CHD][hapmap]
rs7635923	0.83[CHD][hapmap]
rs967861	0.83[CHD][hapmap]
rs9840502	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9846393	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9861445	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139977800-139981800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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