Variant report

Variant	rs13067133
Chromosome Location	chr3:22949136-22949137
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13058941	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13070226	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13082504	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13083969	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13090720	0.82[AMR][1000 genomes]
rs34580344	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35601600	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58409287	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60400510	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60764493	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6808532	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71317804	0.82[AMR][1000 genomes]
rs71317807	0.82[AMR][1000 genomes]
rs71317809	0.92[ASN][1000 genomes]
rs71317810	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71317811	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22947200-22949400	Weak transcription	Fetal Lung	lung
2	chr3:22948600-22949200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:22948600-22949400	Enhancers	HSMMtube	muscle
4	chr3:22948600-22949600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:22948600-22949800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:22948600-22949800	Enhancers	Ovary	ovary
7	chr3:22948600-22950400	Enhancers	Stomach Smooth Muscle	stomach
8	chr3:22948800-22951000	Enhancers	Colon Smooth Muscle	Colon
9	chr3:22949000-22949400	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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