Variant report

Variant	rs60764493
Chromosome Location	chr3:22939777-22939778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13058941	0.89[ASN][1000 genomes]
rs13067133	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13070226	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13081646	0.81[AMR][1000 genomes]
rs13082504	0.89[ASN][1000 genomes]
rs13083969	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13090720	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34580344	0.89[ASN][1000 genomes]
rs35601600	0.87[ASN][1000 genomes]
rs3911393	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58409287	0.87[ASN][1000 genomes]
rs60400510	0.90[ASN][1000 genomes]
rs6808532	0.89[ASN][1000 genomes]
rs71317804	0.83[AMR][1000 genomes]
rs71317807	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71317809	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71317810	0.90[ASN][1000 genomes]
rs71317811	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22938200-22939800	Enhancers	Colon Smooth Muscle	Colon
2	chr3:22938400-22940000	Enhancers	Fetal Lung	lung
3	chr3:22938600-22939800	Enhancers	Fetal Stomach	stomach
4	chr3:22938600-22939800	Enhancers	Rectal Smooth Muscle	rectum
5	chr3:22939000-22939800	Enhancers	Fetal Muscle Leg	muscle
6	chr3:22939200-22940000	Enhancers	Stomach Smooth Muscle	stomach
7	chr3:22939400-22939800	Flanking Active TSS	Fetal Brain Male	brain
8	chr3:22939600-22940000	Enhancers	Ovary	ovary
9	chr3:22939600-22940000	Enhancers	Psoas Muscle	Psoas
10	chr3:22939600-22940000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr3:22939600-22940400	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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