Variant report

Variant	rs13081646
Chromosome Location	chr3:22906007-22906008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13070226	0.89[EUR][1000 genomes]
rs13089308	0.88[ASN][1000 genomes]
rs13090720	0.90[EUR][1000 genomes]
rs13095595	0.89[ASN][1000 genomes]
rs13096041	0.88[ASN][1000 genomes]
rs34805619	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35536199	0.88[ASN][1000 genomes]
rs3911393	0.84[EUR][1000 genomes]
rs56838203	0.85[ASN][1000 genomes]
rs60764493	0.81[AMR][1000 genomes]
rs67065092	0.89[ASN][1000 genomes]
rs67094733	0.88[ASN][1000 genomes]
rs6767087	0.88[ASN][1000 genomes]
rs71317803	0.88[ASN][1000 genomes]
rs71317804	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71317807	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460477	chr3:22532660-22920246	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv589941	chr3:22532660-22920246	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22901800-22911600	Weak transcription	Fetal Lung	lung
2	chr3:22905600-22906200	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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