Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10446448	0.80[EUR][1000 genomes]
rs11714573	0.92[EUR][1000 genomes]
rs11718398	0.82[EUR][1000 genomes]
rs13075507	0.98[EUR][1000 genomes]
rs13081646	0.88[ASN][1000 genomes]
rs13085397	0.82[EUR][1000 genomes]
rs13085538	0.82[EUR][1000 genomes]
rs13089308	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13094040	0.82[EUR][1000 genomes]
rs13095595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13099237	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13100238	0.82[EUR][1000 genomes]
rs13100945	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1597454	0.80[EUR][1000 genomes]
rs17337351	0.82[EUR][1000 genomes]
rs17396388	0.82[EUR][1000 genomes]
rs34282089	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34284390	0.82[EUR][1000 genomes]
rs34805619	0.90[ASN][1000 genomes]
rs35536199	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56838203	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67017252	0.80[EUR][1000 genomes]
rs67065092	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67094733	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767087	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770986	0.95[EUR][1000 genomes]
rs71317803	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460477	chr3:22532660-22920246	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv589941	chr3:22532660-22920246	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22900200-22905600	Weak transcription	Ovary	ovary
2	chr3:22901800-22911600	Weak transcription	Fetal Lung	lung

Quick Search: