Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10446448	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11718398	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13066404	0.82[EUR][1000 genomes]
rs13075507	0.90[EUR][1000 genomes]
rs13085397	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13085538	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13089308	0.85[EUR][1000 genomes]
rs13094040	0.89[EUR][1000 genomes]
rs13095595	0.92[EUR][1000 genomes]
rs13096041	0.92[EUR][1000 genomes]
rs13099237	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13100238	0.89[EUR][1000 genomes]
rs13100945	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1597454	0.87[EUR][1000 genomes]
rs17337267	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17337351	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17396388	0.89[EUR][1000 genomes]
rs34282089	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34284390	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35342568	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35510194	0.86[EUR][1000 genomes]
rs35536199	0.85[EUR][1000 genomes]
rs36004686	0.87[EUR][1000 genomes]
rs56838203	0.85[EUR][1000 genomes]
rs67017252	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs67065092	0.92[EUR][1000 genomes]
rs67094733	0.91[EUR][1000 genomes]
rs6767087	0.91[EUR][1000 genomes]
rs6770986	0.88[EUR][1000 genomes]
rs71317803	0.85[EUR][1000 genomes]
rs7617211	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460477	chr3:22532660-22920246	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv589941	chr3:22532660-22920246	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999013	chr3:22788951-22880732	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1014275	chr3:22796228-22880732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22866800-22877600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:22867400-22867800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr3:22867400-22867800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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