Variant report

Variant	rs13099237
Chromosome Location	chr3:22878573-22878574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10446448	0.96[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11714573	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11715788	0.86[AFR][1000 genomes]
rs11718398	0.82[EUR][1000 genomes]
rs13066404	0.84[EUR][1000 genomes]
rs13075507	0.85[EUR][1000 genomes]
rs13085397	0.82[EUR][1000 genomes]
rs13085538	0.82[EUR][1000 genomes]
rs13087228	0.95[AFR][1000 genomes]
rs13089308	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13092639	0.87[AFR][1000 genomes]
rs13094040	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13094117	0.84[AFR][1000 genomes]
rs13095595	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13096041	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13100238	0.82[EUR][1000 genomes]
rs13100945	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1597454	0.80[EUR][1000 genomes]
rs17337267	0.86[EUR][1000 genomes]
rs17337351	0.82[EUR][1000 genomes]
rs17395804	0.95[AFR][1000 genomes]
rs17396388	0.82[EUR][1000 genomes]
rs34282089	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34284390	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35342568	0.86[EUR][1000 genomes]
rs35536199	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56838203	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67017252	0.96[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs67065092	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67094733	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67445281	0.88[AFR][1000 genomes]
rs6767087	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6770986	0.84[EUR][1000 genomes]
rs71317803	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460477	chr3:22532660-22920246	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv589941	chr3:22532660-22920246	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999013	chr3:22788951-22880732	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1014275	chr3:22796228-22880732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22876200-22881400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:22877400-22879400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:22877600-22879600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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