Variant report

Variant	rs13067394
Chromosome Location	chr3:191397286-191397287
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:191395265..191397942-chr3:191403159..191405641,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11923881	0.86[EUR][1000 genomes]
rs13058999	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13059719	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13066549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13069964	0.86[EUR][1000 genomes]
rs13073988	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13075503	0.86[EUR][1000 genomes]
rs13075638	1.00[CEU][hapmap];0.90[TSI][hapmap]
rs13078315	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13079255	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13082388	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs13084345	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13086688	0.82[EUR][1000 genomes]
rs13099851	0.82[EUR][1000 genomes]
rs13100016	1.00[CEU][hapmap];0.90[TSI][hapmap]
rs13100354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2037575	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2037577	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34124183	0.86[EUR][1000 genomes]
rs34930607	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35202703	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35312731	0.82[EUR][1000 genomes]
rs35884225	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35960806	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36047366	0.86[EUR][1000 genomes]
rs36118580	0.86[EUR][1000 genomes]
rs36151691	0.86[EUR][1000 genomes]
rs58522159	0.82[EUR][1000 genomes]
rs6785213	0.86[EUR][1000 genomes]
rs71312430	0.86[EUR][1000 genomes]
rs71312431	0.86[EUR][1000 genomes]
rs71312442	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs71312443	0.91[EUR][1000 genomes]
rs71312444	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71635005	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915689	chr3:191244719-191479974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv997817	chr3:191284834-191475809	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1001082	chr3:191320636-191579587	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1009378	chr3:191359361-191928703	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1000060	chr3:191359361-191935048	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1002406	chr3:191380544-191404841	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1002112	chr3:191395769-191471002	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv461121	chr3:191395972-191431496	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv592854	chr3:191395972-191431496	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191390800-191406400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:191392200-191404400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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