Variant report

Variant	rs13100354
Chromosome Location	chr3:191390350-191390351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs11918752	0.86[EUR][1000 genomes]
rs11919586	0.86[EUR][1000 genomes]
rs11920068	0.81[EUR][1000 genomes]
rs11922711	0.86[EUR][1000 genomes]
rs11923709	0.86[EUR][1000 genomes]
rs11923881	0.95[EUR][1000 genomes]
rs11923905	0.86[EUR][1000 genomes]
rs11924646	0.86[EUR][1000 genomes]
rs11924686	0.86[EUR][1000 genomes]
rs11927215	0.86[EUR][1000 genomes]
rs13058999	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13059719	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13060140	0.86[EUR][1000 genomes]
rs13061247	0.86[EUR][1000 genomes]
rs13061286	0.86[EUR][1000 genomes]
rs13061344	0.86[EUR][1000 genomes]
rs13061416	0.86[EUR][1000 genomes]
rs13062368	0.86[EUR][1000 genomes]
rs13062859	0.82[EUR][1000 genomes]
rs13063760	0.86[EUR][1000 genomes]
rs13065834	0.86[EUR][1000 genomes]
rs13066549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13067394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13067446	0.86[EUR][1000 genomes]
rs13068594	0.86[EUR][1000 genomes]
rs13068608	0.86[EUR][1000 genomes]
rs13068846	0.86[EUR][1000 genomes]
rs13069964	0.95[EUR][1000 genomes]
rs13071336	0.81[EUR][1000 genomes]
rs13073576	0.86[EUR][1000 genomes]
rs13073988	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13074553	0.86[EUR][1000 genomes]
rs13074573	0.86[EUR][1000 genomes]
rs13074735	0.86[EUR][1000 genomes]
rs13074869	0.86[EUR][1000 genomes]
rs13075002	0.86[EUR][1000 genomes]
rs13075042	0.86[EUR][1000 genomes]
rs13075337	0.86[EUR][1000 genomes]
rs13075503	0.95[EUR][1000 genomes]
rs13075638	1.00[CEU][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs13075894	0.86[EUR][1000 genomes]
rs13077141	0.81[EUR][1000 genomes]
rs13078315	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13079207	0.86[EUR][1000 genomes]
rs13079255	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13079761	0.86[EUR][1000 genomes]
rs13079895	0.86[EUR][1000 genomes]
rs13081466	0.86[EUR][1000 genomes]
rs13082388	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13083205	0.86[EUR][1000 genomes]
rs13083390	0.86[EUR][1000 genomes]
rs13084345	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13085670	0.86[EUR][1000 genomes]
rs13086688	0.90[EUR][1000 genomes]
rs13088741	0.86[EUR][1000 genomes]
rs13089478	0.86[EUR][1000 genomes]
rs13090447	0.86[EUR][1000 genomes]
rs13091849	0.86[EUR][1000 genomes]
rs13091896	0.86[EUR][1000 genomes]
rs13092013	0.86[EUR][1000 genomes]
rs13092899	0.86[EUR][1000 genomes]
rs13093608	0.86[EUR][1000 genomes]
rs13097345	0.86[EUR][1000 genomes]
rs13099777	0.86[EUR][1000 genomes]
rs13099851	0.90[EUR][1000 genomes]
rs13099909	0.86[EUR][1000 genomes]
rs13099935	0.86[EUR][1000 genomes]
rs13100016	1.00[CEU][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs13100217	0.86[EUR][1000 genomes]
rs13100368	0.86[EUR][1000 genomes]
rs13100538	0.86[EUR][1000 genomes]
rs1806334	0.86[EUR][1000 genomes]
rs1916631	0.86[EUR][1000 genomes]
rs1916632	0.86[EUR][1000 genomes]
rs2037575	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2037577	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34124183	0.95[EUR][1000 genomes]
rs34175932	0.86[EUR][1000 genomes]
rs34182626	0.86[EUR][1000 genomes]
rs34372317	0.86[EUR][1000 genomes]
rs34395375	0.81[EUR][1000 genomes]
rs34417776	0.86[EUR][1000 genomes]
rs34541697	0.86[EUR][1000 genomes]
rs34602464	0.81[EUR][1000 genomes]
rs34705049	0.82[EUR][1000 genomes]
rs34756413	0.86[EUR][1000 genomes]
rs34758139	0.86[EUR][1000 genomes]
rs34882440	0.86[EUR][1000 genomes]
rs34930607	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34938847	0.86[EUR][1000 genomes]
rs35102890	0.86[EUR][1000 genomes]
rs35171857	0.86[EUR][1000 genomes]
rs35202703	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35295700	0.86[EUR][1000 genomes]
rs35311163	0.81[EUR][1000 genomes]
rs35312731	0.90[EUR][1000 genomes]
rs35322276	0.86[EUR][1000 genomes]
rs35443405	0.86[EUR][1000 genomes]
rs35467388	0.85[EUR][1000 genomes]
rs35486591	0.86[EUR][1000 genomes]
rs35645410	0.86[EUR][1000 genomes]
rs35689458	0.86[EUR][1000 genomes]
rs35794875	0.86[EUR][1000 genomes]
rs35826551	0.86[EUR][1000 genomes]
rs35884225	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35906203	0.86[EUR][1000 genomes]
rs35960806	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36021699	0.86[EUR][1000 genomes]
rs36036283	0.86[EUR][1000 genomes]
rs36047366	0.95[EUR][1000 genomes]
rs36053678	0.86[EUR][1000 genomes]
rs36055292	0.86[EUR][1000 genomes]
rs36074577	0.86[EUR][1000 genomes]
rs36118580	0.95[EUR][1000 genomes]
rs36122341	0.86[EUR][1000 genomes]
rs36151691	0.95[EUR][1000 genomes]
rs3885870	0.86[EUR][1000 genomes]
rs4282107	0.86[EUR][1000 genomes]
rs58522159	0.90[EUR][1000 genomes]
rs6785213	0.95[EUR][1000 genomes]
rs6786776	0.81[EUR][1000 genomes]
rs71312423	0.81[EUR][1000 genomes]
rs71312425	0.85[EUR][1000 genomes]
rs71312430	0.95[EUR][1000 genomes]
rs71312431	0.95[EUR][1000 genomes]
rs71312432	0.86[EUR][1000 genomes]
rs71312434	0.86[EUR][1000 genomes]
rs71312437	0.86[EUR][1000 genomes]
rs71312438	0.86[EUR][1000 genomes]
rs71312439	0.86[EUR][1000 genomes]
rs71312440	0.86[EUR][1000 genomes]
rs71312442	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs71312443	1.00[EUR][1000 genomes]
rs71312444	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71312445	0.85[EUR][1000 genomes]
rs71635004	0.86[EUR][1000 genomes]
rs71635005	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915689	chr3:191244719-191479974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv997817	chr3:191284834-191475809	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1001082	chr3:191320636-191579587	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1009378	chr3:191359361-191928703	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1000060	chr3:191359361-191935048	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv437360	chr3:191371101-191392897	Genic enhancers Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1002406	chr3:191380544-191404841	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191389600-191390800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:191390000-191391000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:191390200-191390600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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