Variant report

Variant	rs71312445
Chromosome Location	chr3:191412491-191412492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11920068	0.83[AMR][1000 genomes]
rs13066549	0.81[EUR][1000 genomes]
rs13078315	0.81[EUR][1000 genomes]
rs13082388	0.85[EUR][1000 genomes]
rs13100354	0.85[EUR][1000 genomes]
rs34395375	0.83[AMR][1000 genomes]
rs34602464	0.83[AMR][1000 genomes]
rs34930607	0.85[EUR][1000 genomes]
rs35467388	0.83[AMR][1000 genomes]
rs35727241	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35884225	0.85[EUR][1000 genomes]
rs71312442	0.81[EUR][1000 genomes]
rs71312443	0.85[EUR][1000 genomes]
rs71312444	0.85[EUR][1000 genomes]
rs71635005	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915689	chr3:191244719-191479974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv997817	chr3:191284834-191475809	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1001082	chr3:191320636-191579587	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1009378	chr3:191359361-191928703	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1000060	chr3:191359361-191935048	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1002112	chr3:191395769-191471002	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv461121	chr3:191395972-191431496	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv592854	chr3:191395972-191431496	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191411600-191413800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:191411800-191413800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:191411800-191416800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:191412000-191412800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:191412000-191420400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:191412200-191412800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:191412400-191413600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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