Variant report

Variant	rs13088741
Chromosome Location	chr3:191349589-191349590
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs10937504	1.00[ASN][1000 genomes]
rs11918752	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919586	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922711	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923709	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923881	0.90[EUR][1000 genomes]
rs11923905	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924646	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13058999	0.90[EUR][1000 genomes]
rs13059719	0.90[EUR][1000 genomes]
rs13060140	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061286	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061344	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061416	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062859	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13063760	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065834	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13067446	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068608	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068846	1.00[EUR][1000 genomes]
rs13069964	0.90[EUR][1000 genomes]
rs13073576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13073988	0.90[EUR][1000 genomes]
rs13074553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074573	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074735	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074869	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075002	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075337	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075503	0.90[EUR][1000 genomes]
rs13075638	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075894	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079207	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079255	0.90[EUR][1000 genomes]
rs13079761	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079895	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13081466	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13082388	0.86[EUR][1000 genomes]
rs13083205	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13083390	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13084345	0.90[EUR][1000 genomes]
rs13085670	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086688	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13090447	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13091849	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13091896	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13092013	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13092899	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13093608	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097345	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099777	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099851	0.86[EUR][1000 genomes]
rs13099909	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099935	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100016	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100217	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100354	0.86[EUR][1000 genomes]
rs13100368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100538	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1806334	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1806335	1.00[ASN][1000 genomes]
rs1916631	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1916632	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2037575	0.90[EUR][1000 genomes]
rs2037577	0.90[EUR][1000 genomes]
rs28588337	1.00[ASN][1000 genomes]
rs34124183	0.90[EUR][1000 genomes]
rs34175932	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34182626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34372317	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34417776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34541697	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34705049	0.95[EUR][1000 genomes]
rs34756413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34758139	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34882440	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34930607	0.86[EUR][1000 genomes]
rs34938847	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35102890	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35171857	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35202703	0.90[EUR][1000 genomes]
rs35295700	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35311163	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35312731	0.86[EUR][1000 genomes]
rs35322276	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35443405	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35467388	0.81[EUR][1000 genomes]
rs35486591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35645410	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35689458	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35794875	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35826551	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35884225	0.86[EUR][1000 genomes]
rs35906203	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35960806	0.90[EUR][1000 genomes]
rs36021699	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36036283	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36047366	0.90[EUR][1000 genomes]
rs36053678	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36055292	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36074577	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36118580	0.90[EUR][1000 genomes]
rs36122341	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36151691	0.90[EUR][1000 genomes]
rs3885870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4282107	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58522159	0.86[EUR][1000 genomes]
rs6777621	1.00[ASN][1000 genomes]
rs6785213	0.90[EUR][1000 genomes]
rs6785723	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71312425	0.81[EUR][1000 genomes]
rs71312430	0.90[EUR][1000 genomes]
rs71312431	0.90[EUR][1000 genomes]
rs71312432	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71312434	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71312437	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71312438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71312439	1.00[EUR][1000 genomes]
rs71312440	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71312442	0.81[EUR][1000 genomes]
rs71312443	0.86[EUR][1000 genomes]
rs71312444	0.86[EUR][1000 genomes]
rs71635004	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71635005	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008969	chr3:191192569-191383856	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv915689	chr3:191244719-191479974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv997817	chr3:191284834-191475809	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1001082	chr3:191320636-191579587	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv436931	chr3:191348911-191371101	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region	2 gene(s)	inside rSNPs	n/a
6	nsv437355	chr3:191348911-191371101	Enhancers ZNF genes & repeats Weak transcription Strong transcription	TF binding region	2 gene(s)	inside rSNPs	n/a
7	nsv437356	chr3:191348911-191371101	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191345400-191352600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:191345400-191361400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:191348600-191350000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:191348800-191350000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:191349000-191349800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:191349200-191349800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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