Variant report

Variant	rs10937504
Chromosome Location	chr3:191331505-191331506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs11715205	0.87[EUR][1000 genomes]
rs11918752	1.00[ASN][1000 genomes]
rs11919586	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11922711	1.00[ASN][1000 genomes]
rs11923709	1.00[ASN][1000 genomes]
rs11923905	1.00[ASN][1000 genomes]
rs11924646	1.00[ASN][1000 genomes]
rs11924686	1.00[ASN][1000 genomes]
rs11927215	1.00[ASN][1000 genomes]
rs13060140	1.00[ASN][1000 genomes]
rs13061247	1.00[ASN][1000 genomes]
rs13061286	1.00[ASN][1000 genomes]
rs13061344	1.00[ASN][1000 genomes]
rs13061416	1.00[ASN][1000 genomes]
rs13061555	0.94[EUR][1000 genomes]
rs13062368	1.00[ASN][1000 genomes]
rs13062859	1.00[ASN][1000 genomes]
rs13063760	1.00[ASN][1000 genomes]
rs13065834	1.00[ASN][1000 genomes]
rs13067446	1.00[ASN][1000 genomes]
rs13068594	1.00[ASN][1000 genomes]
rs13068608	1.00[ASN][1000 genomes]
rs13073576	1.00[ASN][1000 genomes]
rs13074553	1.00[ASN][1000 genomes]
rs13074573	1.00[ASN][1000 genomes]
rs13074735	1.00[ASN][1000 genomes]
rs13074869	1.00[ASN][1000 genomes]
rs13075002	1.00[ASN][1000 genomes]
rs13075042	1.00[ASN][1000 genomes]
rs13075337	1.00[ASN][1000 genomes]
rs13075638	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13075894	1.00[ASN][1000 genomes]
rs13079207	1.00[ASN][1000 genomes]
rs13079761	1.00[ASN][1000 genomes]
rs13079895	1.00[ASN][1000 genomes]
rs13081466	0.86[ASN][1000 genomes]
rs13083205	1.00[ASN][1000 genomes]
rs13083390	1.00[ASN][1000 genomes]
rs13085670	1.00[ASN][1000 genomes]
rs13086688	1.00[ASN][1000 genomes]
rs13088741	1.00[ASN][1000 genomes]
rs13089478	1.00[ASN][1000 genomes]
rs13089779	0.90[EUR][1000 genomes]
rs13090447	1.00[ASN][1000 genomes]
rs13091849	1.00[ASN][1000 genomes]
rs13091896	1.00[ASN][1000 genomes]
rs13092013	1.00[ASN][1000 genomes]
rs13092899	1.00[ASN][1000 genomes]
rs13093608	1.00[ASN][1000 genomes]
rs13097345	1.00[ASN][1000 genomes]
rs13099777	1.00[ASN][1000 genomes]
rs13099909	1.00[ASN][1000 genomes]
rs13099935	1.00[ASN][1000 genomes]
rs13100016	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13100217	1.00[ASN][1000 genomes]
rs13100368	1.00[ASN][1000 genomes]
rs13100538	1.00[ASN][1000 genomes]
rs1806334	1.00[ASN][1000 genomes]
rs1806335	1.00[ASN][1000 genomes]
rs1851684	0.92[EUR][1000 genomes]
rs1916631	1.00[ASN][1000 genomes]
rs1916632	1.00[ASN][1000 genomes]
rs1916637	0.93[EUR][1000 genomes]
rs1969415	0.81[EUR][1000 genomes]
rs28588337	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34175932	1.00[ASN][1000 genomes]
rs34180265	0.91[EUR][1000 genomes]
rs34182626	1.00[ASN][1000 genomes]
rs34372317	1.00[ASN][1000 genomes]
rs34417776	1.00[ASN][1000 genomes]
rs34541697	1.00[ASN][1000 genomes]
rs34756413	1.00[ASN][1000 genomes]
rs34758139	1.00[ASN][1000 genomes]
rs34882440	1.00[ASN][1000 genomes]
rs34938847	1.00[ASN][1000 genomes]
rs35102890	1.00[ASN][1000 genomes]
rs35171857	1.00[ASN][1000 genomes]
rs35295700	1.00[ASN][1000 genomes]
rs35311163	1.00[ASN][1000 genomes]
rs35322276	1.00[ASN][1000 genomes]
rs35443405	1.00[ASN][1000 genomes]
rs35486591	1.00[ASN][1000 genomes]
rs35645410	1.00[ASN][1000 genomes]
rs35689458	1.00[ASN][1000 genomes]
rs35794875	1.00[ASN][1000 genomes]
rs35826551	1.00[ASN][1000 genomes]
rs35906203	1.00[ASN][1000 genomes]
rs36021699	1.00[ASN][1000 genomes]
rs36036283	1.00[ASN][1000 genomes]
rs36053678	1.00[ASN][1000 genomes]
rs36055292	1.00[ASN][1000 genomes]
rs36074577	1.00[ASN][1000 genomes]
rs36122341	1.00[ASN][1000 genomes]
rs3885870	1.00[ASN][1000 genomes]
rs4282107	1.00[ASN][1000 genomes]
rs4686585	0.93[EUR][1000 genomes]
rs4687246	0.88[EUR][1000 genomes]
rs6768840	0.94[EUR][1000 genomes]
rs6777621	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785723	1.00[ASN][1000 genomes]
rs71312432	1.00[ASN][1000 genomes]
rs71312434	1.00[ASN][1000 genomes]
rs71312437	1.00[ASN][1000 genomes]
rs71312438	1.00[ASN][1000 genomes]
rs71312440	1.00[ASN][1000 genomes]
rs71635004	1.00[ASN][1000 genomes]
rs7651123	0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs9840419	0.84[EUR][1000 genomes]
rs9847678	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008969	chr3:191192569-191383856	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv915689	chr3:191244719-191479974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv997817	chr3:191284834-191475809	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1001082	chr3:191320636-191579587	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10937504	PPP1R2	cis	cerebellum	SCAN
rs10937504	FBXO45	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191325200-191332400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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