Variant report

Variant	rs4686585
Chromosome Location	chr3:191366031-191366032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10937504	0.93[EUR][1000 genomes]
rs11715205	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13061555	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089779	0.95[EUR][1000 genomes]
rs1851684	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1916637	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1969415	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28588337	0.87[EUR][1000 genomes]
rs34180265	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4687246	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4687252	0.82[EUR][1000 genomes]
rs6768840	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777621	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7633696	0.82[EUR][1000 genomes]
rs7651123	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840419	0.87[EUR][1000 genomes]
rs9847678	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008969	chr3:191192569-191383856	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv915689	chr3:191244719-191479974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv997817	chr3:191284834-191475809	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1001082	chr3:191320636-191579587	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv436931	chr3:191348911-191371101	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region	2 gene(s)	inside rSNPs	n/a
6	nsv437355	chr3:191348911-191371101	Enhancers ZNF genes & repeats Weak transcription Strong transcription	TF binding region	2 gene(s)	inside rSNPs	n/a
7	nsv437356	chr3:191348911-191371101	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region	2 gene(s)	inside rSNPs	n/a
8	nsv437358	chr3:191353259-191371101	ZNF genes & repeats Weak transcription Enhancers Strong transcription	TF binding region	2 gene(s)	inside rSNPs	n/a
9	nsv437359	chr3:191353259-191371101	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region	2 gene(s)	inside rSNPs	n/a
10	nsv1009378	chr3:191359361-191928703	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1000060	chr3:191359361-191935048	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191362200-191374800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr3:191365200-191367000	Enhancers	Stomach Mucosa	stomach
3	chr3:191365800-191366200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:191366000-191367600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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