Variant report

Variant	rs13068845
Chromosome Location	chr3:111703989-111703990
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111698497..111700927-chr3:111703000..111705838,3	K562	blood:
2	chr3:111696580..111701033-chr3:111701725..111706722,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144827	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13083736	0.81[EUR][1000 genomes]
rs2120094	0.82[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3762707	0.94[EUR][1000 genomes]
rs3792405	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3804765	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61245364	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6770228	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111698400-111710200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:111698600-111717400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:111698600-111717400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:111698600-111717400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:111698800-111705200	Weak transcription	Fetal Intestine Large	intestine
6	chr3:111698800-111705800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:111698800-111705800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:111698800-111706200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:111698800-111717400	Weak transcription	Colonic Mucosa	Colon
10	chr3:111698800-111717400	Weak transcription	Placenta	Placenta
11	chr3:111698800-111717600	Weak transcription	HSMMtube	muscle
12	chr3:111699000-111717400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr3:111699200-111704600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr3:111699200-111705200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:111699200-111705800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:111699200-111705800	Weak transcription	HMEC	breast
17	chr3:111699200-111717400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr3:111699600-111712400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr3:111699800-111705600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:111699800-111705800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:111700000-111704800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:111700000-111705200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr3:111700000-111705200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:111700000-111705200	Weak transcription	Fetal Stomach	stomach
25	chr3:111700000-111705400	Weak transcription	Lung	lung
26	chr3:111700000-111705600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr3:111700000-111705800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr3:111700000-111705800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr3:111700000-111705800	Weak transcription	NH-A	brain
30	chr3:111700000-111706000	Weak transcription	NHDF-Ad	bronchial
31	chr3:111700000-111707600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr3:111700000-111707800	Weak transcription	K562	blood
33	chr3:111700000-111710200	Weak transcription	Hela-S3	cervix
34	chr3:111700000-111715600	Weak transcription	Spleen	Spleen
35	chr3:111700200-111705200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:111700200-111705200	Weak transcription	Aorta	Aorta
37	chr3:111700200-111705200	Weak transcription	Fetal Intestine Small	intestine
38	chr3:111700200-111705200	Weak transcription	Fetal Muscle Leg	muscle
39	chr3:111700200-111705400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:111700200-111705400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr3:111700200-111705800	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr3:111700200-111705800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr3:111700200-111705800	Weak transcription	Gastric	stomach
44	chr3:111700200-111705800	Weak transcription	Left Ventricle	heart
45	chr3:111700200-111705800	Weak transcription	Psoas Muscle	Psoas
46	chr3:111700200-111706000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr3:111700200-111707400	Weak transcription	Right Ventricle	heart
48	chr3:111700200-111710200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr3:111700200-111717400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:111700200-111717400	Weak transcription	Esophagus	oesophagus

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