Variant report

Variant	rs61245364
Chromosome Location	chr3:111696226-111696227
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:111696022-111696531	HCT-116	colon:	n/a	n/a
2	POLR2A	chr3:111692632-111698289	Hela-S3	cervix:	n/a	n/a
3	CEBPB	chr3:111696158-111696265	HepG2	liver:	n/a	n/a
4	POLR2A	chr3:111696036-111696401	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr3:111695839-111696510	A549	lung:	n/a	n/a
6	POLR2A	chr3:111696183-111696296	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr3:111696117-111696462	SK-N-SH	brain:	n/a	n/a
8	POLR2A	chr3:111696097-111696498	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111687115..111689954-chr3:111695002..111696517,2	MCF-7	breast:

Variant related genes	Relation type
ABHD10	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13068845	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13083736	0.86[EUR][1000 genomes]
rs2120094	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3762707	0.99[EUR][1000 genomes]
rs3792405	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3804765	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6770228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111658600-111697400	Weak transcription	Gastric	stomach
2	chr3:111666600-111697400	Weak transcription	Esophagus	oesophagus
3	chr3:111673000-111697400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:111673000-111697400	Weak transcription	Pancreas	Pancrea
5	chr3:111675000-111697400	Weak transcription	Lung	lung
6	chr3:111681400-111697200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:111681400-111697400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:111685400-111697400	Weak transcription	Fetal Brain Male	brain
9	chr3:111686400-111697200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:111686400-111697200	Weak transcription	Fetal Intestine Small	intestine
11	chr3:111686600-111697200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:111686600-111697200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:111686600-111697200	Weak transcription	Fetal Intestine Large	intestine
14	chr3:111686600-111697200	Weak transcription	HepG2	liver
15	chr3:111686600-111697400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:111686600-111697400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:111686600-111697400	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:111686600-111697400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr3:111686800-111697200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:111688000-111697000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:111688200-111697400	Weak transcription	Right Ventricle	heart
22	chr3:111688800-111697200	Weak transcription	Psoas Muscle	Psoas
23	chr3:111688800-111697400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:111688800-111697400	Weak transcription	NHLF	lung
25	chr3:111689200-111697400	Weak transcription	NHDF-Ad	bronchial
26	chr3:111690600-111697400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:111690800-111697200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr3:111690800-111697200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr3:111690800-111697200	Weak transcription	Fetal Kidney	kidney
30	chr3:111690800-111697200	Weak transcription	Fetal Stomach	stomach
31	chr3:111690800-111697200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr3:111690800-111697400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:111690800-111697400	Weak transcription	Ovary	ovary
34	chr3:111690800-111697800	Weak transcription	Spleen	Spleen
35	chr3:111691000-111696800	Weak transcription	Fetal Lung	lung
36	chr3:111691200-111697200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr3:111691200-111697200	Weak transcription	Fetal Heart	heart
38	chr3:111692000-111697200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr3:111693600-111697200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr3:111693600-111697200	Weak transcription	Fetal Muscle Leg	muscle
41	chr3:111693600-111697400	Weak transcription	Aorta	Aorta
42	chr3:111693600-111697400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr3:111693800-111697200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr3:111693800-111697400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr3:111693800-111697400	Weak transcription	HSMMtube	muscle
46	chr3:111694000-111696800	Weak transcription	HMEC	breast
47	chr3:111694000-111697000	Weak transcription	Hela-S3	cervix
48	chr3:111694000-111697200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr3:111694000-111697200	Weak transcription	Adipose Nuclei	Adipose
50	chr3:111694000-111697400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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