Variant report

Variant	rs13069773
Chromosome Location	chr3:51461080-51461081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:51460834..51463432-chr3:51465142..51467609,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34905826	1.00[AMR][1000 genomes]
rs35134008	1.00[AMR][1000 genomes]
rs35736811	1.00[AMR][1000 genomes]
rs35815149	1.00[AMR][1000 genomes]
rs71297374	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv460536	chr3:51395571-51469107	Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv590276	chr3:51395571-51469107	Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv590277	chr3:51408051-51474418	Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	esv3369762	chr3:51449727-51469314	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3444499	chr3:51449727-51469614	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51431400-51471200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:51433400-51477400	Weak transcription	Fetal Heart	heart
3	chr3:51434000-51475600	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr3:51434200-51477600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:51434600-51471000	Weak transcription	Stomach Mucosa	stomach
6	chr3:51435200-51478000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:51439800-51478000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:51440800-51478200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr3:51441600-51461400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:51444000-51461200	Strong transcription	Placenta	Placenta
11	chr3:51444800-51477800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:51445400-51478400	Strong transcription	Primary B cells from peripheral blood	blood
13	chr3:51446200-51471000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:51446400-51461200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:51446400-51461200	Strong transcription	Fetal Muscle Trunk	muscle
16	chr3:51446400-51461200	Strong transcription	Thymus	Thymus
17	chr3:51448800-51462000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:51451200-51476800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr3:51451400-51469600	Strong transcription	Fetal Stomach	stomach
20	chr3:51452400-51463200	Strong transcription	Fetal Intestine Small	intestine
21	chr3:51454000-51467400	Weak transcription	Small Intestine	intestine
22	chr3:51454800-51466000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr3:51458000-51474800	Weak transcription	K562	blood
24	chr3:51458200-51466000	Weak transcription	Fetal Kidney	kidney
25	chr3:51458200-51466000	Weak transcription	NHEK	skin
26	chr3:51458200-51466200	Weak transcription	Colonic Mucosa	Colon
27	chr3:51458200-51474400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr3:51458200-51474600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr3:51458200-51475200	Weak transcription	NHLF	lung
30	chr3:51458200-51475400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr3:51458200-51477600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr3:51458200-51478400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:51458200-51489400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr3:51458200-51515000	Weak transcription	Fetal Brain Male	brain
35	chr3:51458400-51462400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:51458400-51463400	Weak transcription	Colon Smooth Muscle	Colon
37	chr3:51458400-51464000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:51458400-51464400	Weak transcription	Lung	lung
39	chr3:51458400-51464400	Weak transcription	Osteobl	bone
40	chr3:51458400-51464600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:51458400-51465200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:51458400-51465200	Weak transcription	Esophagus	oesophagus
43	chr3:51458400-51465800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr3:51458400-51466000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr3:51458400-51466000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr3:51458400-51466200	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr3:51458400-51466200	Weak transcription	Right Ventricle	heart
48	chr3:51458400-51466400	Weak transcription	Fetal Lung	lung
49	chr3:51458400-51466600	Weak transcription	NHDF-Ad	bronchial
50	chr3:51458400-51473000	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links