Variant report

Variant	rs34905826
Chromosome Location	chr3:51619806-51619807
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13069773	1.00[AMR][1000 genomes]
rs35134008	1.00[AMR][1000 genomes]
rs35736811	1.00[AMR][1000 genomes]
rs71297374	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv997264	chr3:51584056-51689648	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536570	chr3:51584056-51689648	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv999553	chr3:51584056-51696052	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51574000-51624800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:51574600-51624600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:51574800-51624800	Weak transcription	NH-A	brain
4	chr3:51578800-51624400	Weak transcription	Esophagus	oesophagus
5	chr3:51585200-51624400	Weak transcription	Brain Germinal Matrix	brain
6	chr3:51585800-51625000	Weak transcription	Colonic Mucosa	Colon
7	chr3:51587800-51624400	Weak transcription	Hela-S3	cervix
8	chr3:51588000-51640000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr3:51594200-51622800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:51594200-51622800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:51597200-51622800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr3:51598400-51622800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr3:51600800-51654600	Weak transcription	Stomach Mucosa	stomach
14	chr3:51601000-51624600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr3:51601200-51640000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:51602400-51622800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:51602800-51622800	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:51602800-51624400	Weak transcription	NHLF	lung
19	chr3:51602800-51628200	Weak transcription	Small Intestine	intestine
20	chr3:51602800-51643800	Weak transcription	Right Atrium	heart
21	chr3:51603200-51622800	Weak transcription	HSMM	muscle
22	chr3:51603200-51624400	Weak transcription	Right Ventricle	heart
23	chr3:51607600-51622800	Weak transcription	Adipose Nuclei	Adipose
24	chr3:51607600-51624600	Weak transcription	GM12878-XiMat	blood
25	chr3:51607800-51624400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr3:51607800-51624400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:51607800-51624400	Weak transcription	Placenta	Placenta
28	chr3:51612800-51622800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:51612800-51624400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:51613000-51622600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr3:51613000-51623000	Weak transcription	Fetal Thymus	thymus
32	chr3:51613200-51622800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr3:51613200-51624200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr3:51613200-51624400	Weak transcription	Primary B cells from cord blood	blood
35	chr3:51613200-51624400	Weak transcription	Fetal Brain Female	brain
36	chr3:51613200-51629400	Weak transcription	Fetal Lung	lung
37	chr3:51613200-51630800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr3:51613200-51640000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:51613400-51622800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr3:51613400-51624400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr3:51613400-51624400	Weak transcription	Ovary	ovary
42	chr3:51613400-51624400	Weak transcription	Spleen	Spleen
43	chr3:51613400-51643600	Weak transcription	Pancreas	Pancrea
44	chr3:51614000-51622800	Weak transcription	Dnd41	blood
45	chr3:51614200-51622600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr3:51614400-51622800	Weak transcription	Liver	Liver
47	chr3:51614400-51624200	Weak transcription	Thymus	Thymus
48	chr3:51614400-51624400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr3:51614400-51626600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr3:51614600-51622800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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