Variant report

Variant	rs13070250
Chromosome Location	chr3:68808225-68808226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11128091	0.81[EUR][1000 genomes]
rs12163576	0.85[EUR][1000 genomes]
rs1489996	0.82[EUR][1000 genomes]
rs1565384	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1565385	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17047969	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1813868	0.81[EUR][1000 genomes]
rs2130438	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2171868	0.81[EUR][1000 genomes]
rs4855505	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56109105	0.84[EUR][1000 genomes]
rs56889723	0.83[EUR][1000 genomes]
rs57640416	0.81[EUR][1000 genomes]
rs58972171	0.81[EUR][1000 genomes]
rs59548135	0.81[EUR][1000 genomes]
rs72925108	0.84[EUR][1000 genomes]
rs7623995	0.81[EUR][1000 genomes]
rs870241	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68799800-68808800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:68807800-68811000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:68808000-68808400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:68808000-68808800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:68808000-68808800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:68808000-68809200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:68808000-68809200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:68808000-68810800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:68808200-68808400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr3:68808200-68809000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:68808200-68811200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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