Variant report

Variant	rs2130438
Chromosome Location	chr3:68869334-68869335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11918673	0.91[ASN][1000 genomes]
rs13070250	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1565384	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1565385	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17047969	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1813868	0.81[EUR][1000 genomes]
rs1873266	0.84[EUR][1000 genomes]
rs35994466	0.83[EUR][1000 genomes]
rs4855505	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55691267	0.84[EUR][1000 genomes]
rs56889723	0.80[EUR][1000 genomes]
rs57640416	0.81[EUR][1000 genomes]
rs59548135	0.81[EUR][1000 genomes]
rs72925176	0.81[EUR][1000 genomes]
rs7621862	0.82[EUR][1000 genomes]
rs7647961	0.83[EUR][1000 genomes]
rs7650449	0.83[EUR][1000 genomes]
rs9818001	0.90[ASN][1000 genomes]
rs9822074	0.84[ASN][1000 genomes]
rs9866665	0.83[ASN][1000 genomes]
rs9867187	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv876930	chr3:68844213-68961010	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv876931	chr3:68858280-68961010	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1014265	chr3:68867645-68921748	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
5	nsv876932	chr3:68868560-68961010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68867200-68872800	Weak transcription	Aorta	Aorta
2	chr3:68868400-68869400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:68868600-68869400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:68869000-68869800	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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