Variant report

Variant	rs13071085
Chromosome Location	chr3:136014923-136014924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136014329..136016765-chr3:136018806..136021350,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13059045	0.87[EUR][1000 genomes]
rs13065565	0.83[AFR][1000 genomes]
rs17252498	1.00[ASN][1000 genomes]
rs34154714	1.00[AFR][1000 genomes]
rs34511849	0.81[EUR][1000 genomes]
rs35087366	0.83[AFR][1000 genomes]
rs3821445	1.00[ASN][1000 genomes]
rs489398	1.00[ASN][1000 genomes]
rs61789562	0.83[AFR][1000 genomes]
rs61789642	0.82[EUR][1000 genomes]
rs61789643	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6762209	0.83[AFR][1000 genomes]
rs71336055	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7650071	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135970600-136039400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:135976200-136016400	Weak transcription	Colonic Mucosa	Colon
3	chr3:135976200-136021600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:135981200-136052000	Weak transcription	NH-A	brain
5	chr3:135981600-136020400	Weak transcription	HUVEC	blood vessel
6	chr3:135996800-136016000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:135997400-136015200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:135998000-136040200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:135999800-136016200	Weak transcription	Esophagus	oesophagus
10	chr3:135999800-136016800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:135999800-136019000	Weak transcription	NHEK	skin
12	chr3:135999800-136038200	Weak transcription	Fetal Brain Male	brain
13	chr3:135999800-136061200	Weak transcription	Hela-S3	cervix
14	chr3:136000000-136016600	Weak transcription	Thymus	Thymus
15	chr3:136000000-136024600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:136000200-136038200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:136001200-136016400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr3:136001200-136019200	Weak transcription	Colon Smooth Muscle	Colon
19	chr3:136002000-136017400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:136002200-136015600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:136003000-136016400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:136004200-136016000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:136004200-136016200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr3:136004400-136015600	Weak transcription	Fetal Lung	lung
25	chr3:136004600-136021400	Weak transcription	HMEC	breast
26	chr3:136004600-136022000	Weak transcription	NHDF-Ad	bronchial
27	chr3:136005000-136016000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:136005200-136015800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr3:136005200-136019200	Weak transcription	Osteobl	bone
30	chr3:136005600-136016000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr3:136005600-136016200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:136005800-136016200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr3:136006600-136015800	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr3:136009400-136023000	Strong transcription	Dnd41	blood
35	chr3:136010000-136017800	Strong transcription	Primary T cells from cord blood	blood
36	chr3:136010000-136021000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr3:136010000-136021000	Strong transcription	Liver	Liver
38	chr3:136010200-136015400	Strong transcription	Primary hematopoietic stem cells	blood
39	chr3:136010200-136021200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:136010400-136021000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr3:136010400-136021000	Strong transcription	Fetal Muscle Leg	muscle
42	chr3:136010400-136021000	Strong transcription	Fetal Stomach	stomach
43	chr3:136010600-136018000	Weak transcription	Fetal Heart	heart
44	chr3:136010600-136031400	Weak transcription	Stomach Mucosa	stomach
45	chr3:136010800-136016400	Weak transcription	Gastric	stomach
46	chr3:136010800-136020600	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr3:136011000-136024600	Weak transcription	Psoas Muscle	Psoas
48	chr3:136011200-136020800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:136011400-136015000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:136011800-136018000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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