Variant report

Variant	rs6762209
Chromosome Location	chr3:135891736-135891737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135889455..135892503-chr3:135914551..135918810,3	K562	blood:
2	chr3:135886209..135888091-chr3:135890757..135893050,2	K562	blood:
3	chr3:135885575..135887195-chr3:135890153..135893026,2	MCF-7	breast:
4	chr3:135890394..135895932-chr3:135912281..135916097,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13065565	1.00[AFR][1000 genomes]
rs13071085	0.83[AFR][1000 genomes]
rs35087366	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61789562	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61789643	0.83[AFR][1000 genomes]
rs71336055	0.83[AFR][1000 genomes]
rs7650071	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135862000-135904800	Weak transcription	Hela-S3	cervix
2	chr3:135870800-135895200	Weak transcription	Fetal Intestine Small	intestine
3	chr3:135871000-135897600	Weak transcription	Aorta	Aorta
4	chr3:135871200-135905000	Weak transcription	Fetal Stomach	stomach
5	chr3:135872800-135903600	Weak transcription	Thymus	Thymus
6	chr3:135874800-135897600	Weak transcription	Gastric	stomach
7	chr3:135880000-135906600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr3:135882800-135893000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:135882800-135905200	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:135883400-135892400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:135883400-135901800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:135883800-135901200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:135885600-135897800	Weak transcription	Fetal Thymus	thymus
14	chr3:135885800-135893400	Weak transcription	Ovary	ovary
15	chr3:135886200-135892000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:135888200-135892400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:135888800-135899400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr3:135889000-135892000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:135889200-135891800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:135889200-135905000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:135889400-135891800	Enhancers	HMEC	breast
22	chr3:135889400-135893800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:135889400-135901000	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr3:135889400-135907000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr3:135889400-135910400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr3:135889600-135892200	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr3:135889600-135892600	Enhancers	Primary T cells fromperipheralblood	blood
28	chr3:135889600-135893600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr3:135889600-135893800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr3:135889600-135894600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr3:135889800-135894000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:135889800-135905000	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr3:135890000-135893600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:135890000-135903800	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr3:135890200-135893000	Enhancers	Right Atrium	heart
36	chr3:135890200-135894600	Enhancers	Primary B cells from peripheral blood	blood
37	chr3:135890400-135891800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr3:135890400-135892000	Weak transcription	Liver	Liver
39	chr3:135890400-135892400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:135890400-135892400	Weak transcription	Colon Smooth Muscle	Colon
41	chr3:135890400-135892600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:135890400-135892600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr3:135890400-135892800	Genic enhancers	Primary T cells from cord blood	blood
44	chr3:135890400-135893000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr3:135890400-135893200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:135890400-135893200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr3:135890400-135893600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:135890400-135897800	Weak transcription	Dnd41	blood
49	chr3:135890400-135898600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr3:135890400-135905000	Weak transcription	NHDF-Ad	bronchial

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